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1

Gramene QTL database: development, content and applications

Ni, J., Pujar, A., Youens-Clark, K., Yap, I., Jaiswal, P., Tecle, I., Tung, C.-W., Ren, L., Spooner, W., Wei, X., Avraham, S., Ware, D., Stein, L., McCouch, S.

Journal:

Year:

2009

Language:

english

File:

PDF, 318 KB

english, 2009

2

Abortive regeneration of the transected spinal cord

James O. Brown, Grayson P. McCouch

Journal:

The Journal of Comparative Neurology

Year:

1947

Language:

english

File:

PDF, 458 KB

english, 1947

3

Identification of quantitative trait loci for physical and chemical properties of rice grain

Yong-Gu Cho, Hyeon-Jung Kang, Young-Tae Lee, Seung-Keun Jong, Moo-Young Eun, Susan R. McCouch

Journal:

Plant Biotechnology Reports

Year:

2010

Language:

english

File:

PDF, 355 KB

english, 2010

4

Gene Nomenclature System for Rice

Susan R. McCouch, CGSNL (Committee on Gene Symbolization, Nomenclature and Linkage, Rice Genetics Cooperative)

Journal:

Year:

2008

Language:

english

File:

PDF, 255 KB

english, 2008

5

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development

RANDY T. CLARK, ADAM N. FAMOSO, KEYAN ZHAO, JON E. SHAFF, ERIC J. CRAFT, CARLOS D. BUSTAMANTE, SUSAN R. MCCOUCH, DANIEL J. ANESHANSLEY, LEON V. KOCHIAN

Journal:

Plant, Cell & Environment

Year:

2012

Language:

english

File:

PDF, 2.24 MB

english, 2012

6

The Complex History of the Domestication of Rice

Sweeney, M., McCouch, S.

Journal:

Annals of Botany

Year:

2007

Language:

english

File:

PDF, 348 KB

english, 2007

7

Molecular mapping of genes for resistance to rice blast (Pyricularia griseaSacc.)

Z. H. Yu, D. J. Mackill, J. M. Bonman, S. R. McCouch, E. Guiderdoni, J. L. Notteghem, S. D. Tanksley

Journal:

Theoretical and Applied Genetics

Year:

1996

Language:

english

File:

PDF, 592 KB

english, 1996

8

The semidwarf gene, sd-1, of rice (Oryza sativaL.). II. Molecular mapping and marker-assisted selection

Y. G. Cho, M. Y. Eun, S. R. McCouch, Y. A. Chae

Journal:

Theoretical and Applied Genetics

Year:

1994

Language:

english

File:

PDF, 1.20 MB

english, 1994

9

Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers

Satomi Yoshimura, Atsushi Yoshimura, Nobuo Iwata, Susan R. McCouch, M. Lleva Abenes, Marietta R. Baraoidan, Twng Wah Mew, Rebecca J. Nelson

Journal:

Molecular Breeding

Year:

1995

Language:

english

File:

PDF, 1.25 MB

english, 1995

10

Improvement of hybrid yield by advanced backcross QTL analysis in elite maize

J. Ho, S. McCouch, M. Smith

Journal:

Theoretical and Applied Genetics

Year:

2002

Language:

english

File:

PDF, 142 KB

english, 2002

11

Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross betweenOryza sativaandOryza rufipogon

Xiaobo Xie, Mi-Hee Song, Fengxue Jin, Sang-Nag Ahn, Jung-Pil Suh, Hung-Goo Hwang, S. R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2006

Language:

english

File:

PDF, 435 KB

english, 2006

12

The genetic origin of fragrance in NERICA1

Maxwell Darko Asante, Michael J. Kovach, Lingxia Huang, Sandra Harrington, Paul Kofi Dartey, Richard Akromah, Mande Semon, Susan McCouch

Journal:

Molecular Breeding

Year:

2010

Language:

english

File:

PDF, 288 KB

english, 2010

13

Identification of QTLs for domestication-related and agronomic traits in an Oryza sativa×O. rufipogon BC1F7 population

S.-J. Lee, C.-S. Oh, J.-P. Suh, S. R. McCouch, S.-N. Ahn

Journal:

Year:

2005

Language:

english

File:

PDF, 5.00 MB

english, 2005

14

An active DNA transposon family in rice

Jiang, Ning, Bao, Zhirong, Zhang, Xiaoyu, Hirochika, Hirohiko, Eddy, Sean R., McCouch, Susan R., Wessler, Susan R.

Journal:

Year:

2003

Language:

english

File:

PDF, 470 KB

english, 2003

15

Molecular mapping of a new gene for resistance to rice blast (Pyricularia griseaSacc.)

Sang-Nag Ahn, Yeon-Kyu Kim, Ha-Cheol Hong, Seong-Sook Han, Soo-Jin Kwon, Hae-Chune Choi, Huhn-Pal Moon, Susan R. McCouch

Journal:

Year:

2000

Language:

english

File:

PDF, 69 KB

english, 2000

16

Microsatellite marker development, mapping and applications in rice genetics and breeding

Susan R. McCouch, Xiuli Chen, Olivier Panaud, Svetlana Temnykh, Yunbi Xu, Yong Gu Cho, Ning Huang, Takashige Ishii, Matthew Blair

Journal:

Plant Molecular Biology

Year:

1997

Language:

english

File:

PDF, 196 KB

english, 1997

17

Mapping quantitative trait loci associated with days to flowering and photoperiod sensitivity in rice (Oryza sativa L.)

M. Maheswaran, Ning Huang, S.R. Sreerangasamy, S.R. McCouch

Journal:

Molecular Breeding

Year:

2000

Language:

english

File:

PDF, 102 KB

english, 2000

18

Leveraging natural diversity: back through the bottleneck

MJ Kovach, SR McCouch

Journal:

Current Opinion in Plant Biology

Year:

2008

Language:

english

File:

PDF, 746 KB

english, 2008

19

A Video-Frequency Noise-Spectrum Analyzer

Jastram, P.S., McCouch, G.P.

Journal:

Proceedings of the IRE

Year:

1949

Language:

english

File:

PDF, 2.49 MB

english, 1949

20

Development and Mapping of 2240 New SSR Markers for Rice (Oryza sativa L.)

Journal:

Year:

2002

Language:

english

File:

PDF, 556 KB

english, 2002

21

(First Series) Volume 33 (New Series, Volume 1) || Department of Commercial Law. Brass and Iron Works Co. v. Payne. Supreme Court of Ohio

Frank P. Prichard, H. Gordon McCouch, Chas. C. Binney, Chas. C. Townsend, Francis H. Bohlen, Oliver Boyce Judson and R. D. S.

Journal:

The American Law Register and Review

Year:

1894

Language:

english

File:

PDF, 316 KB

english, 1894

22

Metabolomics and genomics combine to unravel the pathway for the presence of fragrance in rice

Daygon, Venea Dara, Calingacion, Mariafe, Forster, Louise C., Voss, James J. De, Schwartz, Brett D., Ovenden, Ben, Alonso, David E., McCouch, Susan R., Garson, Mary J., Fitzgerald, Melissa A.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.34 MB

english, 2017

23

Gramene: development and integration of trait and gene ontologies for rice

Pankaj Jaiswal, Doreen Ware, Junjian Ni, Kuan Chang, Wei Zhao, Steven Schmidt, Xiaokang Pan, Kenneth Clark, Leonid Teytelman, Samuel Cartinhour, Lincoln Stein, Susan McCouch

Journal:

Comparative and Functional Genomics

Year:

2002

Language:

english

File:

PDF, 153 KB

english, 2002

24

Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages

Pankaj Jaiswal, Shulamit Avraham, Katica Ilic, Elizabeth A Kellogg, Susan McCouch, Anuradha Pujar, Leonore Reiser, Seung Y Rhee, Martin M. Sachs, Mary Schaeffer, Lincoln Stein, Peter Stevens, Leszek V

Journal:

Comparative and Functional Genomics

Year:

2005

Language:

english

File:

PDF, 374 KB

english, 2005

25

Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice

Annemarie H. Meijer, Enrico Scarpella, Erwin L. van Dijk, Ling Qin, Anke J.C. Taal, Saskia Rueb, Sandra E. Harrington, Susan R. McCouch, Rob A. Schilperoort, J. Harry C. Hoge

Journal:

The Plant Journal

Year:

1997

File:

PDF, 1.98 MB

1997

26

Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis

Zhixi Tian, Yanjun Yu, Feng Lin, Yeisoo Yu, Phillip J SanMiguel, Rod A Wing, Susan R McCouch, Jianxin Ma, Scott A Jackson

Journal:

Year:

2011

Language:

english

File:

PDF, 536 KB

english, 2011

27

Orientation and integration of the classical and molecular genetic maps of chromosome 11 in rice

M. L. P. Abenes, R. E. Tabien, S. R. McCouch, R. Ikeda, P. Ronald, G. S. Khush, N. Huang

Journal:

Year:

1994

Language:

english

File:

PDF, 480 KB

english, 1994

28

Molecular-marker-facilitated investigation on the ability to stimulate N2fixation in the rhizosphere by irrigated rice plants

P. Wu, G. Zhang, J. K. Ladha, S. R. McCouch, N. Huang

Journal:

Theoretical and Applied Genetics

Year:

1995

Language:

english

File:

PDF, 676 KB

english, 1995

29

Molecular analysis of the inheritance of theS-5locus, conferring wide compatibility in Indica/Japonica hybrids of rice (O. sativaL.)

S. Yanagihara, S. R. McCouch, K. Ishikawa, Y. Ogi, K. Maruyama, H. Ikehashi

Journal:

Theoretical and Applied Genetics

Year:

1995

Language:

english

File:

PDF, 739 KB

english, 1995

30

Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers

M. C. Champoux, G. Wang, S. Sarkarung, D. J. Mackill, J. C. O'Toole, N. Huang, S. R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

1995

Language:

english

File:

PDF, 1.35 MB

english, 1995

31

Genetic diversity and phylogeny analysis ofAnabaena azollaebased on RFLPs detected inAzolla-Anabaena azollaeDNA complexes using nif gene probes

B. Coppenolle, S. R. McCouch, I. Watanabe, N. Huang, C. Hove

Journal:

Theoretical and Applied Genetics

Year:

1995

Language:

english

File:

PDF, 1.48 MB

english, 1995

32

Molecular mapping of thegesgene controlling the super-giant embryo character in rice (Oryza sativaL.)

H. -J. Koh, M. -H. Heu, S. R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

1996

Language:

english

File:

PDF, 783 KB

english, 1996

33

Mapping quantitative trait loci associated with root penetration ability in rice (Oryza sativaL.)

J. D. Ray, L. Yu, S. R. McCouch, M. C. Champoux, G. Wang, H. T. Nguyen

Journal:

Theoretical and Applied Genetics

Year:

1996

Language:

english

File:

PDF, 1019 KB

english, 1996

34

Genetic diversity and its relationship to hybrid performance and heterosis in rice as revealed by PCR-based markers

J. Xiao, J. Li, L. Yuan, S. R. McCouch, S. D. Tanksley

Journal:

Theoretical and Applied Genetics

Year:

1996

Language:

english

File:

PDF, 787 KB

english, 1996

35

Molecular mapping of rice chromosomes

S. R. McCouch, G. Kochert, Z. H. Yu, Z. Y. Wang, G. S. Khush, W. R. Coffman, S. D. Tanksley

Journal:

Theoretical and Applied Genetics

Year:

1988

Language:

english

File:

PDF, 2.74 MB

english, 1988

36

Genetic and physical analysis of the rice bacterial blight disease resistance locus,Xa21

Pamela C. Ronald, Beng Albano, Rodante Tabien, Lleva Abenes, Kung-sheng Wu, Susan McCouch, Steven D. Tanksley

Journal:

Molecular Genetics and Genomics

Year:

1992

Language:

english

File:

PDF, 1.18 MB

english, 1992

37

Comparative mapping in grasses. Oat relationships

Allen E. Deynze, James C. Nelson, Louise S. O'Donoughue, Sang Nag Ahn, Wilawan Siripoonwiwat, Sandra E. Harrington, Eliana S. Yglesias, Daniella P. Braga, Susan R. McCouch, Mark E. Sorrells

Journal:

Molecular Genetics and Genomics

Year:

1995

Language:

english

File:

PDF, 886 KB

english, 1995

38

Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativaL.)

O. Panaud, X. Chen, S. R. McCouch

Journal:

Molecular Genetics and Genomics

Year:

1996

Language:

english

File:

PDF, 1.31 MB

english, 1996

39

Comparative mapping in grasses. Wheat relationships

Allen E. Deynze, James C. Nelson, Eliana S. Yglesias, Sandra E. Harrington, Daniella P. Braga, Susan R. McCouch, Mark E. Sorrells

Journal:

Molecular Genetics and Genomics

Year:

1995

Language:

english

File:

PDF, 1.37 MB

english, 1995

40

Extension of the rice DH population genetic map with microsatellite markers

Yunbi Xu, Lishuang Shen, Susan R. McCouch, Lihuang Zhu

Journal:

Chinese Science Bulletin

Year:

1998

Language:

english

File:

PDF, 397 KB

english, 1998

41

Fluorescent-labeled microsatellite panels useful for detecting allelic diversity in cultivated rice (Oryza sativaL.)

Matthew W. Blair, Veena Hedetale, Susan R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2002

Language:

english

File:

PDF, 125 KB

english, 2002

42

High resolution genetic mapping and candidate gene identification at thexa5locus for bacterial blight resistance in rice (Oryza sativaL.)

Matthew W. Blair, Amanda J. Garris, Anjali S. Iyer, Brad Chapman, Stephen Kresovich, Susan R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2003

Language:

english

File:

PDF, 343 KB

english, 2003

43

Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population betweenOryza rufipogonand theOryza sativacultivar Jefferson

M. J. Thomson, T. H. Tai, A. M. McClung, X-H. Lai, M. E. Hinga, K. B. Lobos, Y. Xu, C. P. Martinez, S. R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2003

Language:

english

File:

PDF, 307 KB

english, 2003

44

Identification of quantitative trait loci for grain quality in an advanced backcross population derived from theOryza sativavariety IR64 and the wild relativeO. rufipogon

E.M. Septiningsih, K.R. Trijatmiko, S. Moeljopawiro, S.R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2003

Language:

english

File:

PDF, 246 KB

english, 2003

45

Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from theOryza sativavariety IR64 and the wild relativeO. rufipogon

E.M. Septiningsih, J. Prasetiyono, E. Lubis, T.H. Tai, T. Tjubaryat, S. Moeljopawiro, S.R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2003

Language:

english

File:

PDF, 362 KB

english, 2003

46

Genetic analysis of Indian aromatic and quality rice (Oryza sativaL.) germplasm using panels of fluorescently-labeled microsatellite markers

Sunita Jain, Rajinder K. Jain, Susan R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2004

Language:

english

File:

PDF, 277 KB

english, 2004

47

Identification of candidate markers associated with agronomic traits in rice using discriminant analysis

N. Zhang, Y. Xu, M. Akash, S. McCouch, J. H. Oard

Journal:

Theoretical and Applied Genetics

Year:

2005

Language:

english

File:

PDF, 272 KB

english, 2005

48

Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativaL.) germplasm using microsatellite markers

Michael J. Thomson, Endang M. Septiningsih, Fatimah Suwardjo, Tri J. Santoso, Tiur S. Silitonga, Susan R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2007

Language:

english

File:

PDF, 658 KB

english, 2007

49

Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in anOryza sativa

Xiaobo Xie, Fengxue Jin, Mi-Hee Song, Jung-Pil Suh, Hung-Goo Hwang, Yeon-Gyu Kim, Susan R. McCouch, Sang-Nag Ahn

Journal:

Theoretical and Applied Genetics

Year:

2008

Language:

english

File:

PDF, 483 KB

english, 2008

50

Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping

Yunbi Xu, Dominique This, Roman C. Pausch, Wendy M. Vonhof, Jason R. Coburn, Jonathan P. Comstock, Susan R. McCouch

Journal:

Theoretical and Applied Genetics

Year:

2009

Language:

english

File:

PDF, 468 KB

english, 2009

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